SONiCS

SONiCS performs dense forward simulations of the PCR of Short Tandem Repeats from capture experiments, calculates the likelihood of generating the provided read support (reads per allele) out of the final PCR pool and determines the most probable genotype based on the log likelihood distributions from all such simulations.

Kasia Kedzierska
Kasia Kedzierska
DPhil Candidate in Genomic Medicine and Statistics

I’m a computational biologists (i.e. data scientist for genomic data). My research interests include ML for computational biology, epigenomics, tumor evolution and heterogeneity. I like plotting pretty figures to illustrate the point I’m making.